skimulator error message with Anaconda navigator on Windows 10

[Brendan Darrer]

Where did you get your skimulator package from? It seems that you are using an old version (where the share/VERSION.txt was missing). The parameter file you are using is also deprecated and has been removed from git. I would recommand that you clone the last version of the skimulator or try to install the latest version directly from the git repository because this package evolves rapidly:

Code:

pip install git+https://git.oceandatalab.com/skim/skimulator.git@master

Please remember that the skimulator is evolving a lot, therefore you should pull the last version regularly and check the parameter_example_* files in example for new keys or updated configurations.

Thank you Lucile! I will try this out and see if it works.

---

Where did you get your skimulator package from? It seems that you are using an old version (where the share/VERSION.txt was missing). The parameter file you are using is also deprecated and has been removed from git. I would recommand that you clone the last version of the skimulator or try to install the latest version directly from the git repository because this package evolves rapidly:

Code:

pip install git+https://git.oceandatalab.com/skim/skimulator.git@master

Please remember that the skimulator is evolving a lot, therefore you should pull the last version regularly and check the parameter_example_* files in example for new keys or updated configurations.

I have now installed skimulator again, after uninstalling it with pip uninstall skimulator. I Installed the zip version:

skimulator-20149b9158aa69098d0d7b52342349a0ef94d4aa.zip    dated 14.12.2018, 07:14.

Initially I installed it using: pip install git+https://git.oceandatalab.com/skim/skimulator.git@master

This installs it ok showing:

Code:

(base) C:\Users\pclink>pip install git+https://git.oceandatalab.com/skim/skimulator.git@master
Collecting git+https://git.oceandatalab.com/skim/skimulator.git@master
  Cloning https://git.oceandatalab.com/skim/skimulator.git (to revision master) to c:\users\pclink\appdata\local\temp\pip-req-build-rivf1co6
Requirement already satisfied: Numpy in c:\users\pclink\anaconda3\lib\site-packages (from skimulator==1.0.163) (1.15.4)
Requirement already satisfied: Scipy in c:\users\pclink\anaconda3\lib\site-packages (from skimulator==1.0.163) (1.1.0)
Requirement already satisfied: netCDF4 in c:\users\pclink\anaconda3\lib\site-packages (from skimulator==1.0.163) (1.4.2)
Requirement already satisfied: cftime in c:\users\pclink\anaconda3\lib\site-packages (from netCDF4->skimulator==1.0.163) (1.0.2.1)
Building wheels for collected packages: skimulator
  Running setup.py bdist_wheel for skimulator ... done
  Stored in directory: C:\Users\pclink\AppData\Local\Temp\pip-ephem-wheel-cache-4i7upk00\wheels\89\61\7a\36539677d1f88dd9b0758af6859824135bd339b3ee79185b78
Successfully built skimulator
Installing collected packages: skimulator
Successfully installed skimulator-1.0.163

..but I cannot find the install directory afterwards, and if I try to run it (in a directory copied from a colleague's version, known to work), it gives output of :

Code:

(base) C:\Users\pclink\skimulator\example>skimulator params_2017v2_23W.py
Data directory C:\Users\pclink/src/skimulator\data not found

So I downloaded the zip version above, and installed with:

python setup.py install in the skimulator.git directory. Output:

Code:

(base) C:\Users\pclink\Documents\skimulator\skimulator.git>python setup.py install
Warning: 'keywords' should be a list, got type 'tuple'
C:\Users\pclink\Anaconda3\lib\distutils\dist.py:274: UserWarning: Unknown distribution option: 'setup_require'
  warnings.warn(msg)
running install
running bdist_egg
running egg_info
creating skimulator.egg-info
writing skimulator.egg-info\PKG-INFO
writing dependency_links to skimulator.egg-info\dependency_links.txt
writing entry points to skimulator.egg-info\entry_points.txt
writing requirements to skimulator.egg-info\requires.txt
writing top-level names to skimulator.egg-info\top_level.txt
writing manifest file 'skimulator.egg-info\SOURCES.txt'
reading manifest file 'skimulator.egg-info\SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.txt' under directory 'docs'
warning: no files found matching '*.txt' under directory 'skimulator\share'
writing manifest file 'skimulator.egg-info\SOURCES.txt'
installing library code to build\bdist.win-amd64\egg
running install_lib
running build_py
creating build
creating build\lib
creating build\lib\skimulator
copying skimulator\build_error.py -> build\lib\skimulator
copying skimulator\build_swath.py -> build\lib\skimulator
copying skimulator\cli.py -> build\lib\skimulator
copying skimulator\const.py -> build\lib\skimulator
copying skimulator\mod_run.py -> build\lib\skimulator
copying skimulator\mod_tools.py -> build\lib\skimulator
copying skimulator\mod_uwb_corr.py -> build\lib\skimulator
copying skimulator\regridding.py -> build\lib\skimulator
copying skimulator\run_simulator.py -> build\lib\skimulator
copying skimulator\rw_data.py -> build\lib\skimulator
copying skimulator\__init__.py -> build\lib\skimulator
creating build\bdist.win-amd64
creating build\bdist.win-amd64\egg
creating build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\build_error.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\build_swath.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\cli.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\const.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\mod_run.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\mod_tools.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\mod_uwb_corr.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\regridding.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\run_simulator.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\rw_data.py -> build\bdist.win-amd64\egg\skimulator
copying build\lib\skimulator\__init__.py -> build\bdist.win-amd64\egg\skimulator
byte-compiling build\bdist.win-amd64\egg\skimulator\build_error.py to build_error.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\build_swath.py to build_swath.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\cli.py to cli.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\const.py to const.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\mod_run.py to mod_run.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\mod_tools.py to mod_tools.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\mod_uwb_corr.py to mod_uwb_corr.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\regridding.py to regridding.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\run_simulator.py to run_simulator.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\rw_data.py to rw_data.cpython-37.pyc
byte-compiling build\bdist.win-amd64\egg\skimulator\__init__.py to __init__.cpython-37.pyc
creating build\bdist.win-amd64\egg\EGG-INFO
copying skimulator.egg-info\PKG-INFO -> build\bdist.win-amd64\egg\EGG-INFO
copying skimulator.egg-info\SOURCES.txt -> build\bdist.win-amd64\egg\EGG-INFO
copying skimulator.egg-info\dependency_links.txt -> build\bdist.win-amd64\egg\EGG-INFO
copying skimulator.egg-info\entry_points.txt -> build\bdist.win-amd64\egg\EGG-INFO
copying skimulator.egg-info\requires.txt -> build\bdist.win-amd64\egg\EGG-INFO
copying skimulator.egg-info\top_level.txt -> build\bdist.win-amd64\egg\EGG-INFO
zip_safe flag not set; analyzing archive contents...
creating dist
creating 'dist\skimulator-1.0-py3.7.egg' and adding 'build\bdist.win-amd64\egg' to it
removing 'build\bdist.win-amd64\egg' (and everything under it)
Processing skimulator-1.0-py3.7.egg
Copying skimulator-1.0-py3.7.egg to c:\users\pclink\anaconda3\lib\site-packages
Adding skimulator 1.0 to easy-install.pth file
Installing skiml2c-script.py script to C:\Users\pclink\Anaconda3\Scripts
Installing skiml2c.exe script to C:\Users\pclink\Anaconda3\Scripts
Installing skimulator-script.py script to C:\Users\pclink\Anaconda3\Scripts
Installing skimulator.exe script to C:\Users\pclink\Anaconda3\Scripts

Installed c:\users\pclink\anaconda3\lib\site-packages\skimulator-1.0-py3.7.egg
Processing dependencies for skimulator==1.0
Searching for netCDF4==1.4.2
Best match: netCDF4 1.4.2
Adding netCDF4 1.4.2 to easy-install.pth file
Installing nc3tonc4-script.py script to C:\Users\pclink\Anaconda3\Scripts
Installing nc3tonc4.exe script to C:\Users\pclink\Anaconda3\Scripts
Installing nc4tonc3-script.py script to C:\Users\pclink\Anaconda3\Scripts
Installing nc4tonc3.exe script to C:\Users\pclink\Anaconda3\Scripts
Installing ncinfo-script.py script to C:\Users\pclink\Anaconda3\Scripts
Installing ncinfo.exe script to C:\Users\pclink\Anaconda3\Scripts

Using c:\users\pclink\anaconda3\lib\site-packages
Searching for scipy==1.1.0
Best match: scipy 1.1.0
Adding scipy 1.1.0 to easy-install.pth file

Using c:\users\pclink\anaconda3\lib\site-packages
Searching for numpy==1.15.4
Best match: numpy 1.15.4
Adding numpy 1.15.4 to easy-install.pth file

Using c:\users\pclink\anaconda3\lib\site-packages
Searching for cftime==1.0.2.1
Best match: cftime 1.0.2.1
Adding cftime 1.0.2.1 to easy-install.pth file

Using c:\users\pclink\anaconda3\lib\site-packages
Finished processing dependencies for skimulator==1.0

It gives a very similar error message to the original above, when I try to run,
skimulator params_example_6beams.py :

Code:

(base) C:\Users\pclink\Documents\skimulator\skimulator.git\example>skimulator params_example_6beams.py
Traceback (most recent call last):
  File "C:\Users\pclink\Anaconda3\Scripts\skimulator-script.py", line 11, in <module>
    load_entry_point('skimulator==1.0', 'console_scripts', 'skimulator')()
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 484, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 2707, in load_entry_point
    return ep.load()
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 2325, in load
    return self.resolve()
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 2331, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
  File "<frozen importlib._bootstrap>", line 983, in _find_and_load
  File "<frozen importlib._bootstrap>", line 967, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 668, in _load_unlocked
  File "<frozen importlib._bootstrap>", line 638, in _load_backward_compatible
  File "C:\Users\pclink\Anaconda3\lib\site-packages\skimulator-1.0-py3.7.egg\skimulator\__init__.py", line 62, in <module>
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 1140, in resource_filename
    self, resource_name
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 1647, in get_resource_filename
    return self._extract_resource(manager, zip_path)
  File "C:\Users\pclink\Anaconda3\lib\site-packages\pkg_resources\__init__.py", line 1668, in _extract_resource
    timestamp, size = self._get_date_and_size(self.zipinfo[zip_path])
KeyError: 'skimulator\\share\\VERSION.txt'